PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00083.1_g00011.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 248aa    MW: 28129.5 Da    PI: 9.3219
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00083.1_g00011.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM165.51.9e-51141381128
                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 
                              lppGfrFhPtdeelvv+yLk+kv +++l++ ++i+++d+++++PwdLp +    eke yfFs+r+ ky++g+r+nrat sgyWkat
  Rsa1.0_00083.1_g00011.1  14 LPPGFRFHPTDEELVVQYLKRKVLSSPLPA-SIIPDFDVCRADPWDLPGN---LEKERYFFSTREAKYPNGNRSNRATGSGYWKAT 95 
                              79****************************.89***************44...4789***************************** PP

                      NAM  87 gkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                              g dk+++++ +++ vglkktLvfykg+ p+g++tdW+mheyrl
  Rsa1.0_00083.1_g00011.1  96 GIDKRIVTSrGNQIVGLKKTLVFYKGKPPHGSRTDWIMHEYRL 138
                              *****998856777***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-6010160IPR003441NAC domain
PROSITE profilePS5100558.82814160IPR003441NAC domain
PfamPF023652.1E-2715138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MDNVKFVKNG VMRLPPGFRF HPTDEELVVQ YLKRKVLSSP LPASIIPDFD VCRADPWDLP  60
GNLEKERYFF STREAKYPNG NRSNRATGSG YWKATGIDKR IVTSRGNQIV GLKKTLVFYK  120
GKPPHGSRTD WIMHEYRLSS SPPSSLGPTE NWVLCRIFLK KRASNNDDDG DNRNLGYGNE  180
HIEITTANQT EDKTKPIFFD FMRKDRTTDL NLLPGSPTSD HASSGLTTEI FSSDEESSSS  240
CNSFRRNL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4dul_B4e-511216615171NAC domain-containing protein 19
4dul_A4e-511216615171NAC domain-containing protein 19
1ut7_B4e-511216615171NO APICAL MERISTEM PROTEIN
1ut7_A4e-511216615171NO APICAL MERISTEM PROTEIN
1ut4_B4e-511216615171NO APICAL MERISTEM PROTEIN
1ut4_A4e-511216615171NO APICAL MERISTEM PROTEIN
3swp_D4e-511216618174NAC domain-containing protein 19
3swp_C4e-511216618174NAC domain-containing protein 19
3swp_B4e-511216618174NAC domain-containing protein 19
3swp_A4e-511216618174NAC domain-containing protein 19
3swm_D4e-511216618174NAC domain-containing protein 19
3swm_C4e-511216618174NAC domain-containing protein 19
3swm_B4e-511216618174NAC domain-containing protein 19
3swm_A4e-511216618174NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF9578370.0JF957837.1 Brassica napus NAC5 mRNA, complete cds.
GenBankKC9667590.0KC966759.1 Brassica napus NAC transcription factor 83 (NAC83.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013616284.11e-170PREDICTED: NAC domain-containing protein 83-like
SwissprotQ9FY931e-144NAC83_ARATH; NAC domain-containing protein 83
TrEMBLA0A078DVB11e-170A0A078DVB1_BRANA; BnaC02g04540D protein
TrEMBLA0A0D3AIS91e-170A0A0D3AIS9_BRAOL; Uncharacterized protein
STRINGBra023395.1-P1e-168(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18062786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.11e-131NAC domain containing protein 83